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Computational Chemist – Molecular Dynamics Simulation Expert

Pyramid Consulting, Inc Waltham, MA (Onsite) Contractor

Immediate need for a talented Computational Chemist – Molecular Dynamics Simulation Expert. This is a 12+months contract opportunity with long-term potential and is located in Waltham, MA (Hybrid). Please review the job description below and contact me ASAP if you are interested.

Job ID: 25-80008

Pay Range: $44 - $48/hour.  Employee benefits include, but are not limited to, health insurance (medical, dental, vision), 401(k) plan, and paid sick leave (depending on work location).

Key Responsibilities:

  • Design and conduct MD simulations to explore structure, dynamics, and interactions relevant to molecular interactions
  • Apply coarse-grained MD techniques and contribute to methodological improvements where possible
  • Analyze and interpret simulation results; effectively communicate findings to multidisciplinary project teams
  • Collaborate with experimental and therapeutic area colleagues to link modeling data to biological and pharmacological outcomes
  • Document methodologies, results, and best practices to enable knowledge transfer and reproducibility

Key Requirements and Technology Experience: 

  • Key Skills; Molecular Dynamics (MD) Simulation/ Python, Bash/ Computational Chemistry
  • You have a PhD (or equivalent experience) in computational chemistry, biophysics, structural biology, or a related field.
  • You have a proven track record with molecular dynamics simulation methodologies, including set-up, execution, and analysis
  • PhD- Years of experience: up to 10 years of experience is max
  • Phython and SAP skills are required.
  • Preferably, you bring hands-on experience with coarse-grained MD approaches (such as MARTINI or related frameworks)
  • You are proficient in standard scientific programming/scripting (e.g., Python, Bash, or similar)
  • You communicate scientific concepts clearly, both verbally and in writing
  • Familiarity with other computational biophysics techniques (e.g., protein-protein docking, enhanced sampling)
  • PhD- Years of experience: up to 10 years of experience is max
  • Phython and SAP skills are required.

Our client is a leading biopharmaceutical Industry and we are currently interviewing to fill this and other similar contract positions. If you are interested in this position, please apply online for immediate consideration.

Pyramid Consulting, Inc. provides equal employment opportunities to all employees and applicants for employment and prohibits discrimination and harassment of any type without regard to race, color, religion, age, sex, national origin, disability status, genetics, protected veteran status, sexual orientation, gender identity or expression, or any other characteristic protected by federal, state or local laws.

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.  #Mor 2 J2W:CB3
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Job Snapshot

Employee Type

Contractor

Location

Waltham, MA (Onsite)

Job Type

Other

Experience

Not Specified

Date Posted

07/29/2025

Apply to this job.

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